As of TreeFix v1.1.5, this has now been packaged into the main TreeFix program. Previously, it required installing a separate package TreeFix-RAxML.
Computes the SH-test statistic using RAxML site-wise likelihoods. This package bundles a Python wrapper with modified RAxML source code (v7.0.4). (The original RAxML source code is available here.) If you use this module, please cite both TreeFix and RAxML.
Last updated 06/19/13.