TreeFix Archive

Main program

Change log

2014.06.19
TreeFix 1.1.10:   treefix-1.1.10.tar.gz (current version)
2013.11.05
TreeFix 1.1.8:     treefix-1.1.8.tar.gz
2012.12.14
TreeFix 1.1.7:     treefix-1.1.7.tar.gz
2012.11.06
TreeFix 1.1.6:     treefix-1.1.6.tar.gz
2012.08.27
TreeFix 1.1.5:     treefix-1.1.5.tar.gz
2012.08.17
TreeFix 1.1.4:     treefix-1.1.4.tar.gz
2012.06.26
TreeFix 1.1.3:     treefix-1.1.3.tar.gz
2012.05.11
TreeFix 1.1.2:     treefix-1.1.2.tar.gz
2012.05.08
TreeFix 1.1.1:     treefix-1.1.1.tar.gz
2012.03.26
TreeFix 1.1:         treefix-1.1.tar.gz
2011.11.12
TreeFix 1.0:         treefix-1.0.tar.gz

Likelihood models

TreeFix-RAxML (Change log)

As of TreeFix v1.1.5, this has now been packaged into the main TreeFix program. Previously, it required installing a separate package TreeFix-RAxML.
Computes the SH-test statistic using RAxML site-wise likelihoods. This package bundles a Python wrapper with modified RAxML source code (v7.0.4). (The original RAxML source code is available here.) If you use this module, please cite both TreeFix and RAxML.

2012.08.17
TreeFix-RAxML 0.2.3:     treefix-raxml-0.2.3.tar.gz
2012.06.26
TreeFix-RAxML 0.2.2:     treefix-raxml-0.2.2.tar.gz
2012.05.11
TreeFix-RAxML 0.2.1:     treefix-raxml-0.2.1.tar.gz
2012.03.26
TreeFix-RAxML 0.2:         treefix-raxml-0.2.tar.gz
2011.11.12
TreeFix-RAxML 0.1:         treefix-raxml-0.1.tar.gz

Reconciliation models

No previous versions exist.

Last updated 06/19/13.